Illustrated · 2 min
What Are Punnett Squares?
They are a tool used to figure out the possible allele combinations of a genetic cross. A genetic cross is a fancy way of talking about two parents' genes combining with each other when they create offspring.
Alleles, Genes, and Genetic Crosses
As a reminder, there are two types of allele combinations possible. The first is homozygous, which means two copies of the same allele, like BB for two dominant alleles or bb for two recessive alleles. The other possible combination is heterozygous, which means one of each type of allele, like Bb for one dominant and one recessive allele.

Image source: By Darryl Leja, National Human Genome Research Institute [Public domain], via Wikimedia Commons
Building A Punnett Square
The first step is to draw a square. We pick a parent—it doesn't matter which one—and write its alleles on the top of the square. We then pick the other parent and write its alleles on the left side of the square.
While drawing this, we have to be careful with the dominant and recessive alleles. Capital letters are typically used for the dominant trait, while lowercase letters are used for recessive traits. If you see a lowercase and an uppercase letter together, the uppercase letter (the dominant one) is the one that will be expressed.
In the example below, yellow coloring is the dominant phenotype for pea plants. Any offspring that inherit the allele for yellow coloring, represented by a capital Y, will have that coloring.

Image source: By Pbroks13 CC BY-SA 3.0, via Wikimedia Commons
If we want to predict the genotype of future generations, we can just keep making more squares.

Image source: By OpenStax College CC BY 3.0, via Wikimedia Commons
In this section, we talked about monohybrid crosses. These crosses focus only on a single trait. If you want to know how two different traits, say plant color and height, are passed down, you will have to construct a dihybrid cross.
: A chromosome is a long, single, coiled piece of DNA
: A specific characteristic that is different from one individual to another
: A segment of DNA that codes for a specific trait or protein
: Genes of the same type that contain different kinds of information. Alleles can be dominant or recessive
: The stronger of two expressed genes
: The weaker of two expressed genes. Only shown if a gene is homozygous recessive
: Two different kinds of allele, one dominant and one recessive
: Two of the same type of allele, both dominant or both recessive
: A method of determining the probabilities of which traits the offspring of two organisms will inherit





